Variant report

Variant	rs556085
Chromosome Location	chr6:163522166-163522167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2476473	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2763991	0.94[ASN][1000 genomes]
rs471261	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472033	0.90[EUR][1000 genomes]
rs472429	0.87[ASN][1000 genomes]
rs474520	0.90[ASN][1000 genomes]
rs475849	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs476445	0.94[ASN][1000 genomes]
rs477514	0.92[EUR][1000 genomes]
rs480064	0.89[ASN][1000 genomes]
rs485054	0.87[ASN][1000 genomes]
rs493411	0.88[ASN][1000 genomes]
rs493847	0.87[ASN][1000 genomes]
rs498325	0.92[EUR][1000 genomes]
rs500019	0.90[EUR][1000 genomes]
rs501775	0.92[EUR][1000 genomes]
rs520741	0.88[ASN][1000 genomes]
rs520847	0.94[ASN][1000 genomes]
rs522682	0.94[ASN][1000 genomes]
rs524763	0.94[ASN][1000 genomes]
rs536392	0.92[EUR][1000 genomes]
rs537327	0.92[EUR][1000 genomes]
rs541681	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs549110	0.85[ASN][1000 genomes]
rs551797	0.90[ASN][1000 genomes]
rs556971	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570398	0.92[EUR][1000 genomes]
rs574055	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs577398	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs578974	0.92[EUR][1000 genomes]
rs579172	0.90[ASN][1000 genomes]
rs579982	0.92[EUR][1000 genomes]
rs61302670	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163520200-163534800	Weak transcription	Left Ventricle	heart
2	chr6:163520800-163531000	Weak transcription	Fetal Heart	heart
3	chr6:163521000-163531400	Weak transcription	Right Ventricle	heart
4	chr6:163521200-163522200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:163521600-163522200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:163521600-163523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:163521800-163523600	Weak transcription	Pancreas	Pancrea

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