Variant report

Variant	rs472429
Chromosome Location	chr6:163501536-163501537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs2476473	0.88[ASN][1000 genomes]
rs2763991	0.85[ASN][1000 genomes]
rs471261	0.85[ASN][1000 genomes]
rs474520	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs475849	0.87[ASN][1000 genomes]
rs476062	0.97[EUR][1000 genomes]
rs476445	0.85[ASN][1000 genomes]
rs480064	0.95[ASN][1000 genomes]
rs485054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs492214	0.82[EUR][1000 genomes]
rs493411	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs493847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495882	0.96[EUR][1000 genomes]
rs520741	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs520847	0.84[ASN][1000 genomes]
rs522682	0.84[ASN][1000 genomes]
rs524763	0.84[ASN][1000 genomes]
rs528064	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs541681	0.85[ASN][1000 genomes]
rs547244	0.97[EUR][1000 genomes]
rs549110	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs551705	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551797	0.97[ASN][1000 genomes]
rs556085	0.87[ASN][1000 genomes]
rs556971	0.87[ASN][1000 genomes]
rs561216	0.96[EUR][1000 genomes]
rs562100	0.94[EUR][1000 genomes]
rs562299	0.82[EUR][1000 genomes]
rs566169	0.81[EUR][1000 genomes]
rs573070	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs574055	0.88[ASN][1000 genomes]
rs577398	0.84[ASN][1000 genomes]
rs578822	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs579172	0.97[ASN][1000 genomes]
rs579628	0.97[EUR][1000 genomes]
rs61302670	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1021433	chr6:163375760-163509866	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163500000-163504400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:163500400-163506000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:163501400-163501600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:163501400-163501600	ZNF genes & repeats	Pancreas	Pancrea

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