Variant report

Variant	rs476062
Chromosome Location	chr6:163506315-163506316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2985041	0.82[ASN][1000 genomes]
rs472033	0.83[ASN][1000 genomes]
rs472429	0.97[EUR][1000 genomes]
rs474520	0.94[EUR][1000 genomes]
rs477514	0.84[ASN][1000 genomes]
rs477618	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs485054	0.98[EUR][1000 genomes]
rs488831	0.84[AFR][1000 genomes]
rs492214	0.83[EUR][1000 genomes]
rs493411	0.96[EUR][1000 genomes]
rs493847	0.98[EUR][1000 genomes]
rs495882	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs498325	0.82[ASN][1000 genomes]
rs500019	0.84[ASN][1000 genomes]
rs501775	0.84[ASN][1000 genomes]
rs510791	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs514432	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs520741	0.98[EUR][1000 genomes]
rs528064	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs532764	0.83[ASN][1000 genomes]
rs535238	0.83[ASN][1000 genomes]
rs536392	0.82[ASN][1000 genomes]
rs537327	0.82[ASN][1000 genomes]
rs542711	0.96[ASN][1000 genomes]
rs547244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs54773	0.85[ASN][1000 genomes]
rs549110	0.95[EUR][1000 genomes]
rs551705	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs552752	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs558627	0.93[ASN][1000 genomes]
rs561216	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs562100	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs562299	0.83[EUR][1000 genomes]
rs566169	0.82[EUR][1000 genomes]
rs568619	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs570398	0.84[ASN][1000 genomes]
rs573070	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs576381	0.83[ASN][1000 genomes]
rs578822	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs578974	0.82[ASN][1000 genomes]
rs579628	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579982	0.82[ASN][1000 genomes]
rs61302670	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1021433	chr6:163375760-163509866	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163501600-163506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:163501600-163508400	Weak transcription	Pancreas	Pancrea
3	chr6:163503200-163507000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:163503800-163507400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:163503800-163507600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:163503800-163507600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:163504200-163506600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:163504600-163506400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:163504600-163506400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:163504600-163507400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:163504600-163507400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:163505200-163514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:163505600-163506800	Enhancers	Fetal Heart	heart
14	chr6:163506000-163507200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:163506200-163506600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:163506200-163507400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links