Variant report

Variant	rs528064
Chromosome Location	chr6:163513832-163513833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2985041	0.83[ASN][1000 genomes]
rs472033	0.84[ASN][1000 genomes]
rs472429	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs474520	0.96[EUR][1000 genomes]
rs476062	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs477514	0.85[ASN][1000 genomes]
rs477618	0.92[ASN][1000 genomes]
rs485054	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492214	0.81[EUR][1000 genomes]
rs493411	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs493847	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495882	0.96[EUR][1000 genomes]
rs498325	0.83[ASN][1000 genomes]
rs500019	0.85[ASN][1000 genomes]
rs501775	0.85[ASN][1000 genomes]
rs510791	0.97[ASN][1000 genomes]
rs514432	0.82[ASN][1000 genomes]
rs520741	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs532764	0.83[ASN][1000 genomes]
rs535238	0.84[ASN][1000 genomes]
rs536392	0.83[ASN][1000 genomes]
rs537327	0.83[ASN][1000 genomes]
rs542711	0.97[ASN][1000 genomes]
rs547244	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs54773	0.85[ASN][1000 genomes]
rs549110	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs551705	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs552752	0.97[ASN][1000 genomes]
rs554159	0.80[ASN][1000 genomes]
rs558627	0.94[ASN][1000 genomes]
rs561216	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs562100	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs562299	0.81[EUR][1000 genomes]
rs566169	0.81[EUR][1000 genomes]
rs568619	0.82[ASN][1000 genomes]
rs570398	0.85[ASN][1000 genomes]
rs573070	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs576381	0.83[ASN][1000 genomes]
rs578822	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578974	0.83[ASN][1000 genomes]
rs579628	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs579982	0.83[ASN][1000 genomes]
rs61302670	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163505200-163514200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:163507200-163519400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:163507400-163514600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:163507400-163514800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:163507400-163515000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:163508800-163520800	Weak transcription	Pancreas	Pancrea
7	chr6:163510200-163519200	Weak transcription	Right Ventricle	heart
8	chr6:163510400-163519400	Weak transcription	Left Ventricle	heart
9	chr6:163512000-163519400	Weak transcription	Fetal Heart	heart
10	chr6:163513000-163516800	Enhancers	Brain Germinal Matrix	brain
11	chr6:163513200-163514000	Enhancers	Brain Anterior Caudate	brain
12	chr6:163513200-163514200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:163513200-163514400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:163513200-163514600	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:163513200-163514800	Enhancers	Brain Hippocampus Middle	brain
16	chr6:163513200-163515200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:163513400-163514400	Enhancers	Brain Angular Gyrus	brain
18	chr6:163513400-163514400	Enhancers	Brain Substantia Nigra	brain
19	chr6:163513600-163514800	Enhancers	Fetal Stomach	stomach
20	chr6:163513800-163514200	Enhancers	Fetal Brain Female	brain
21	chr6:163513800-163515000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:163513800-163515600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:163513800-163519200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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