Variant report

Variant	rs2985041
Chromosome Location	chr6:163531072-163531073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163530518..163532397-chr6:163534746..163536959,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-9	chr6:163530440-163532004	ucscGeneNc_uc010kkg_1

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs2763991	0.95[EUR][1000 genomes]
rs472033	0.96[ASN][1000 genomes]
rs476062	0.82[ASN][1000 genomes]
rs476445	0.95[EUR][1000 genomes]
rs477514	0.97[ASN][1000 genomes]
rs477618	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs480064	0.84[EUR][1000 genomes]
rs488831	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs498325	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs500019	0.94[ASN][1000 genomes]
rs501775	0.94[ASN][1000 genomes]
rs510791	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs520847	0.92[EUR][1000 genomes]
rs522682	0.92[EUR][1000 genomes]
rs524763	0.97[EUR][1000 genomes]
rs528064	0.83[ASN][1000 genomes]
rs532764	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs535238	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536392	0.97[ASN][1000 genomes]
rs537327	0.97[ASN][1000 genomes]
rs542711	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs547244	0.81[ASN][1000 genomes]
rs54773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs548705	0.83[EUR][1000 genomes]
rs551705	0.81[ASN][1000 genomes]
rs551797	0.84[EUR][1000 genomes]
rs552752	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs554159	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs558627	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561216	0.83[ASN][1000 genomes]
rs562100	0.83[ASN][1000 genomes]
rs568619	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs570398	0.94[ASN][1000 genomes]
rs573070	0.81[ASN][1000 genomes]
rs576381	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs578822	0.83[ASN][1000 genomes]
rs578974	0.97[ASN][1000 genomes]
rs579172	0.84[EUR][1000 genomes]
rs579628	0.81[ASN][1000 genomes]
rs579982	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163520200-163534800	Weak transcription	Left Ventricle	heart
2	chr6:163521000-163531400	Weak transcription	Right Ventricle	heart
3	chr6:163530600-163531600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:163531000-163531600	Enhancers	Fetal Heart	heart

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