Variant report

Variant	rs556094
Chromosome Location	chr11:56798951-56798952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1615587	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1792461	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1792480	0.87[ASN][1000 genomes]
rs1792481	0.87[ASN][1000 genomes]
rs1793435	0.88[ASN][1000 genomes]
rs1793437	0.88[ASN][1000 genomes]
rs1793444	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2511487	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2853073	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2853083	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4938847	0.87[ASN][1000 genomes]
rs572029	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs573678	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs594932	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629788	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs637536	0.81[AFR][1000 genomes]
rs655949	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs657584	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56798800-56799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:56798800-56799200	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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