Variant report
| Variant | rs657584 |
|---|---|
| Chromosome Location | chr11:56810801-56810802 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| OR5AO1P | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1615587 | 0.83[ASN][1000 genomes] |
| rs1792461 | 0.84[ASN][1000 genomes] |
| rs1792480 | 0.83[ASN][1000 genomes] |
| rs1792481 | 0.83[ASN][1000 genomes] |
| rs1793435 | 0.84[ASN][1000 genomes] |
| rs1793437 | 0.84[ASN][1000 genomes] |
| rs1793444 | 0.84[ASN][1000 genomes] |
| rs2511487 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2853073 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2853083 | 0.95[CEU][hapmap] |
| rs4938847 | 0.83[ASN][1000 genomes] |
| rs556094 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs572029 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs573678 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs594932 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs629788 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs637536 | 0.83[AFR][1000 genomes] |
| rs655949 | 0.95[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs668370 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832162 | chr11:56716658-56901528 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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