Variant report

Variant	rs556184
Chromosome Location	chr7:49857330-49857331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1244321	1.00[AMR][1000 genomes]
rs477954	1.00[AMR][1000 genomes]
rs481343	1.00[AMR][1000 genomes]
rs485157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485900	1.00[AMR][1000 genomes]
rs494232	1.00[AMR][1000 genomes]
rs494886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs497605	1.00[AMR][1000 genomes]
rs515813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs527240	1.00[AMR][1000 genomes]
rs562452	1.00[AMR][1000 genomes]
rs564797	1.00[AMR][1000 genomes]
rs575043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs575410	1.00[AMR][1000 genomes]
rs577985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594773	1.00[AMR][1000 genomes]
rs690714	1.00[AMR][1000 genomes]
rs690869	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs690996	1.00[AMR][1000 genomes]
rs691275	1.00[AMR][1000 genomes]
rs691424	1.00[AMR][1000 genomes]
rs691465	1.00[AMR][1000 genomes]
rs692378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs692575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:49841400-49862800	Weak transcription	Pancreas	Pancrea
2	chr7:49843400-49863000	Weak transcription	Left Ventricle	heart
3	chr7:49846000-49859800	Weak transcription	Ovary	ovary
4	chr7:49853200-49858600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:49853800-49858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:49854600-49858600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:49856800-49857400	Enhancers	Fetal Heart	heart
8	chr7:49856800-49859800	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links