Variant report

Variant	rs564797
Chromosome Location	chr7:49825543-49825544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1244321	1.00[AMR][1000 genomes]
rs477954	1.00[AMR][1000 genomes]
rs481343	1.00[AMR][1000 genomes]
rs485157	1.00[AMR][1000 genomes]
rs485900	1.00[AMR][1000 genomes]
rs494232	1.00[AMR][1000 genomes]
rs494886	1.00[AMR][1000 genomes]
rs497605	1.00[AMR][1000 genomes]
rs515813	1.00[AMR][1000 genomes]
rs527240	1.00[AMR][1000 genomes]
rs556184	1.00[AMR][1000 genomes]
rs562452	1.00[AMR][1000 genomes]
rs575043	1.00[AMR][1000 genomes]
rs575410	1.00[AMR][1000 genomes]
rs577985	1.00[AMR][1000 genomes]
rs594773	1.00[AMR][1000 genomes]
rs690714	1.00[AMR][1000 genomes]
rs690869	1.00[AMR][1000 genomes]
rs690996	1.00[AMR][1000 genomes]
rs691275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691424	1.00[AMR][1000 genomes]
rs691465	1.00[AMR][1000 genomes]
rs692378	1.00[AMR][1000 genomes]
rs692575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606896	chr7:49449367-49830719	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv830996	chr7:49691223-49853606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:49815800-49827800	Weak transcription	Pancreas	Pancrea
2	chr7:49816000-49842600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:49817400-49826600	Weak transcription	Right Ventricle	heart
4	chr7:49819000-49830400	Weak transcription	Ovary	ovary
5	chr7:49821600-49827200	Weak transcription	Right Atrium	heart
6	chr7:49824200-49828400	Weak transcription	Fetal Heart	heart
7	chr7:49824400-49826600	Weak transcription	Left Ventricle	heart

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