Variant report

Variant	rs55633458
Chromosome Location	chr15:34051034-34051035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1429754	1.00[AFR][1000 genomes]
rs55804668	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56357702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56407262	1.00[AMR][1000 genomes]
rs6495238	1.00[EUR][1000 genomes]
rs72713292	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72713300	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715112	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715114	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715116	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715127	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715129	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715130	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715132	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72715144	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72715146	1.00[AMR][1000 genomes]
rs72715153	1.00[AMR][1000 genomes]
rs72715156	1.00[AMR][1000 genomes]
rs72715167	1.00[AMR][1000 genomes]
rs72715171	1.00[AMR][1000 genomes]
rs72715172	1.00[AMR][1000 genomes]
rs72715173	1.00[AMR][1000 genomes]
rs72715175	1.00[AMR][1000 genomes]
rs72715176	1.00[AMR][1000 genomes]
rs72715178	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34046600-34051200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:34048600-34051200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:34048800-34051200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:34048800-34051600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr15:34049200-34057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:34050200-34051200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:34050400-34074200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:34050600-34051200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr15:34050800-34052000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:34050800-34063800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:34050800-34072400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
13	chr15:34051000-34072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle

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