Variant report

Variant	rs72715172
Chromosome Location	chr15:34089358-34089359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55633458	1.00[AMR][1000 genomes]
rs55660925	0.92[EUR][1000 genomes]
rs55804668	1.00[AMR][1000 genomes]
rs56357702	1.00[AMR][1000 genomes]
rs56407262	1.00[AMR][1000 genomes]
rs72713292	1.00[AMR][1000 genomes]
rs72713300	1.00[AMR][1000 genomes]
rs72715112	1.00[AMR][1000 genomes]
rs72715114	1.00[AMR][1000 genomes]
rs72715116	1.00[AMR][1000 genomes]
rs72715127	1.00[AMR][1000 genomes]
rs72715129	1.00[AMR][1000 genomes]
rs72715130	1.00[AMR][1000 genomes]
rs72715132	1.00[AMR][1000 genomes]
rs72715144	1.00[AMR][1000 genomes]
rs72715146	1.00[AMR][1000 genomes]
rs72715153	1.00[AMR][1000 genomes]
rs72715156	1.00[AMR][1000 genomes]
rs72715167	1.00[AMR][1000 genomes]
rs72715171	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72715173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34061600-34121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:34071400-34107200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:34073800-34102800	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:34078600-34099000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:34080800-34105000	Weak transcription	Aorta	Aorta
6	chr15:34081000-34093800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:34081000-34094200	Weak transcription	Brain Anterior Caudate	brain
8	chr15:34081000-34094200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:34081000-34102400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:34082000-34090800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:34084600-34095600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:34087400-34089400	Weak transcription	Fetal Lung	lung
13	chr15:34087400-34093200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:34087600-34094200	Weak transcription	Fetal Stomach	stomach
15	chr15:34089200-34090200	Strong transcription	Fetal Muscle Leg	muscle

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