Variant report

Variant	rs55636616
Chromosome Location	chr7:19617735-19617736
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1008704	0.88[AMR][1000 genomes]
rs10228147	0.88[EUR][1000 genomes]
rs10230207	0.85[EUR][1000 genomes]
rs10230658	0.89[AMR][1000 genomes]
rs10244808	0.89[AMR][1000 genomes]
rs10248814	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10267686	0.82[EUR][1000 genomes]
rs10269875	0.89[AMR][1000 genomes]
rs10273311	0.88[EUR][1000 genomes]
rs1074858	0.88[EUR][1000 genomes]
rs10807794	0.86[EUR][1000 genomes]
rs11489333	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11505420	0.87[AMR][1000 genomes]
rs1158069	0.83[EUR][1000 genomes]
rs11767221	0.85[EUR][1000 genomes]
rs12535260	0.87[AMR][1000 genomes]
rs12538102	0.89[EUR][1000 genomes]
rs12700057	0.88[AMR][1000 genomes]
rs12700058	0.87[AMR][1000 genomes]
rs13437937	0.89[EUR][1000 genomes]
rs17354412	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1985774	0.85[AMR][1000 genomes]
rs1989540	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052207	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2058422	0.88[EUR][1000 genomes]
rs2109873	0.86[EUR][1000 genomes]
rs2109874	0.88[EUR][1000 genomes]
rs2192476	0.86[EUR][1000 genomes]
rs2192482	0.90[AMR][1000 genomes]
rs2192484	0.89[AMR][1000 genomes]
rs2192485	0.89[AMR][1000 genomes]
rs2390142	0.86[EUR][1000 genomes]
rs2390143	0.88[EUR][1000 genomes]
rs28407069	0.88[EUR][1000 genomes]
rs28441314	0.87[EUR][1000 genomes]
rs4236295	0.89[EUR][1000 genomes]
rs4236296	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4337996	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4509205	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4626493	0.87[EUR][1000 genomes]
rs4719574	0.89[EUR][1000 genomes]
rs4719575	0.89[EUR][1000 genomes]
rs4719576	0.89[EUR][1000 genomes]
rs4721791	0.89[EUR][1000 genomes]
rs4721792	0.89[EUR][1000 genomes]
rs4721793	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721794	0.88[EUR][1000 genomes]
rs55883028	0.82[EUR][1000 genomes]
rs56229068	0.85[EUR][1000 genomes]
rs62448110	0.86[EUR][1000 genomes]
rs6461445	0.89[EUR][1000 genomes]
rs6461446	0.89[EUR][1000 genomes]
rs6963439	0.89[AMR][1000 genomes]
rs6965419	0.85[EUR][1000 genomes]
rs6966112	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6971829	0.87[AMR][1000 genomes]
rs6972245	0.87[AMR][1000 genomes]
rs714392	0.85[EUR][1000 genomes]
rs759248	0.89[AMR][1000 genomes]
rs7786622	0.87[EUR][1000 genomes]
rs7789868	0.90[AMR][1000 genomes]
rs7797567	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7797751	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7798205	0.89[EUR][1000 genomes]
rs7802880	0.89[EUR][1000 genomes]
rs7805790	0.87[EUR][1000 genomes]
rs917917	0.90[AMR][1000 genomes]
rs917918	0.89[AMR][1000 genomes]
rs917919	0.89[AMR][1000 genomes]
rs9648259	0.87[AMR][1000 genomes]
rs9655167	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655168	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655174	0.89[EUR][1000 genomes]
rs9655175	0.89[EUR][1000 genomes]
rs985306	0.88[AMR][1000 genomes]
rs985307	0.88[AMR][1000 genomes]
rs985881	0.87[AMR][1000 genomes]
rs985882	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1016344	chr7:19574677-19654624	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1032609	chr7:19575555-19654624	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv21425	chr7:19613957-19628138	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19602400-19618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19617600-19618000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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