Variant report

Variant	rs55637078
Chromosome Location	chr5:126192603-126192604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126187764..126191404-chr5:126191529..126194421,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10478756	1.00[ASN][1000 genomes]
rs12514978	0.86[AMR][1000 genomes]
rs12517303	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12520218	0.86[AMR][1000 genomes]
rs12522425	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17165305	0.85[ASN][1000 genomes]
rs17839709	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17839711	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2230151	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs34364708	0.86[AMR][1000 genomes]
rs3805737	0.86[AMR][1000 genomes]
rs55784400	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924928	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56052550	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58103919	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58418743	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61383192	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72780212	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72780215	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72780216	0.90[AMR][1000 genomes]
rs72780217	0.86[AMR][1000 genomes]
rs72780218	0.86[AMR][1000 genomes]
rs72780220	0.86[AMR][1000 genomes]
rs72780222	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72780283	1.00[ASN][1000 genomes]
rs72780284	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126148200-126193200	Weak transcription	Brain Angular Gyrus	brain
2	chr5:126158000-126204600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:126163800-126193200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:126182600-126193000	Weak transcription	Right Ventricle	heart
5	chr5:126183600-126210400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:126183800-126193000	Weak transcription	Fetal Lung	lung
7	chr5:126183800-126193400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:126184400-126193000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:126184400-126193200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:126184400-126193600	Weak transcription	Brain Germinal Matrix	brain
11	chr5:126184600-126193000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:126187800-126192800	Weak transcription	Fetal Heart	heart
13	chr5:126188000-126193400	Weak transcription	Fetal Kidney	kidney
14	chr5:126188200-126193200	Weak transcription	Brain Anterior Caudate	brain
15	chr5:126188200-126193600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:126188200-126200800	Weak transcription	NHDF-Ad	bronchial
17	chr5:126188200-126203400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:126188400-126193000	Weak transcription	Osteobl	bone
19	chr5:126188400-126193200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:126188600-126193200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:126188600-126193200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:126188600-126204400	Weak transcription	NH-A	brain
23	chr5:126188800-126193400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:126188800-126204600	Weak transcription	NHLF	lung
25	chr5:126189000-126193000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:126189000-126193200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:126189000-126193200	Weak transcription	HSMMtube	muscle
28	chr5:126189000-126193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:126189000-126193800	Weak transcription	Lung	lung
30	chr5:126189400-126193200	Weak transcription	Fetal Brain Male	brain
31	chr5:126189400-126193200	Weak transcription	Fetal Brain Female	brain
32	chr5:126189400-126202600	Weak transcription	Right Atrium	heart
33	chr5:126189800-126201000	Weak transcription	A549	lung
34	chr5:126190000-126203800	Weak transcription	Fetal Thymus	thymus
35	chr5:126190400-126193400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr5:126190400-126193600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:126190400-126204400	Weak transcription	Primary B cells from cord blood	blood
38	chr5:126190800-126203000	Weak transcription	Spleen	Spleen
39	chr5:126191000-126192800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:126191000-126193200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr5:126191000-126194000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:126191200-126192800	Weak transcription	Thymus	Thymus
43	chr5:126191200-126194000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:126191400-126192800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:126191400-126192800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:126191400-126193200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr5:126191400-126193200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:126191400-126204600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:126191600-126200000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr5:126191600-126201000	Weak transcription	HUVEC	blood vessel

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