The 2.0 version of rSNPBase

Variant report

Variant rs56052550
Chromosome Location chr5:126177811-126177812
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:126141200-126181800 Weak transcription Rectal Smooth Muscle rectum
2 chr5:126146000-126183200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:126146000-126183600 Weak transcription Left Ventricle heart
4 chr5:126148200-126182400 Weak transcription HSMMtube muscle
5 chr5:126148200-126193200 Weak transcription Brain Angular Gyrus brain
6 chr5:126149600-126181400 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr5:126151400-126181400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:126158000-126204600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr5:126162600-126181200 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr5:126162800-126182000 Weak transcription Brain Anterior Caudate brain
11 chr5:126163000-126181600 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr5:126163200-126181200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr5:126163600-126181200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr5:126163600-126181200 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr5:126163800-126182200 Weak transcription Colonic Mucosa Colon
16 chr5:126163800-126182600 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr5:126163800-126193200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr5:126164000-126182400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr5:126165600-126181400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr5:126166000-126181200 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr5:126167200-126181200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr5:126169600-126181400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr5:126169600-126182600 Weak transcription Placenta Placenta
24 chr5:126169800-126180600 Weak transcription Duodenum Mucosa Duodenum
25 chr5:126169800-126181400 Weak transcription Fetal Kidney kidney
26 chr5:126169800-126181400 Weak transcription Osteobl bone
27 chr5:126169800-126181600 Weak transcription HSMM muscle
28 chr5:126169800-126181600 Weak transcription NHDF-Ad bronchial
29 chr5:126169800-126181800 Weak transcription Fetal Brain Male brain
30 chr5:126169800-126184800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:126170000-126179200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:126170000-126181400 Weak transcription Muscle Satellite Cultured Cells --
33 chr5:126170000-126181400 Weak transcription Adipose Nuclei Adipose
34 chr5:126170200-126181200 Weak transcription Fetal Muscle Trunk muscle
35 chr5:126170200-126182200 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr5:126170200-126183200 Weak transcription Lung lung
37 chr5:126170200-126184800 Weak transcription Spleen Spleen
38 chr5:126170200-126186800 Weak transcription NHLF lung
39 chr5:126170400-126181400 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr5:126170400-126181600 Weak transcription Fetal Intestine Small intestine
41 chr5:126170800-126181200 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr5:126171000-126181200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr5:126171000-126181600 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr5:126171200-126181200 Weak transcription Primary T cells fromperipheralblood blood
45 chr5:126171200-126187000 Weak transcription NH-A brain
46 chr5:126171400-126181200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr5:126171600-126181400 Weak transcription Thymus Thymus
48 chr5:126171800-126181400 Weak transcription Fetal Stomach stomach
49 chr5:126171800-126181800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr5:126171800-126182400 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015