Variant report

Variant	rs55638303
Chromosome Location	chr7:128885770-128885771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128863037..128866889-chr7:128882617..128886190,4	MCF-7	breast:
2	chr7:128873646..128876213-chr7:128883173..128885864,2	K562	blood:
3	chr7:128877623..128879223-chr7:128884322..128886478,2	K562	blood:

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10257620	0.85[ASN][1000 genomes]
rs10954224	0.98[ASN][1000 genomes]
rs10954226	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11763056	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11763325	0.88[EUR][1000 genomes]
rs11769045	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11979476	0.81[EUR][1000 genomes]
rs12111832	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12112374	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13235668	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13235749	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13238161	0.89[ASN][1000 genomes]
rs1473236	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17168512	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2012919	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2056694	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2103232	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2141075	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402945	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2566876	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2566877	0.85[ASN][1000 genomes]
rs2718084	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2718086	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2718115	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2896415	0.96[ASN][1000 genomes]
rs4440569	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4731566	0.98[ASN][1000 genomes]
rs4731568	0.90[ASN][1000 genomes]
rs56026912	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59659852	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60275163	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62480596	0.94[ASN][1000 genomes]
rs6467233	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467235	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66538149	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66864889	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66970518	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67520056	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67820265	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67853067	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67997229	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68076553	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68187585	0.80[EUR][1000 genomes]
rs6942756	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948252	0.84[EUR][1000 genomes]
rs6949950	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6971917	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6974155	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6980385	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs721691	0.92[ASN][1000 genomes]
rs73472312	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7778277	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7780886	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7792317	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7803052	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7806089	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7811141	0.92[ASN][1000 genomes]
rs891545	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs963465	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9640854	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641846	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9641849	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128902200	Weak transcription	Gastric	stomach
2	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
3	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
4	chr7:128866400-128899000	Weak transcription	Ovary	ovary
5	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:128876400-128889800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:128878800-128897000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:128880400-128889800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:128880600-128887000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:128881000-128892000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:128881000-128898800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:128882000-128899600	Weak transcription	Left Ventricle	heart
18	chr7:128882200-128888000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:128884400-128887000	Weak transcription	NHEK	skin
20	chr7:128884400-128888000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:128884600-128887200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:128884800-128898800	Weak transcription	Primary T cells from cord blood	blood
23	chr7:128885000-128887600	Weak transcription	Fetal Heart	heart
24	chr7:128885000-128890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:128885600-128885800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr7:128885600-128886200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:128885600-128898600	Weak transcription	Brain Germinal Matrix	brain

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