Variant report

Variant	rs963465
Chromosome Location	chr7:128875612-128875613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128863779..128867507-chr7:128873644..128876495,3	MCF-7	breast:
2	chr7:128873646..128876213-chr7:128883173..128885864,2	K562	blood:
3	chr7:128864543..128866836-chr7:128874671..128876224,2	K562	blood:

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1000676	0.81[JPT][hapmap]
rs10248810	0.96[CEU][hapmap];0.86[JPT][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10257620	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10954224	0.95[ASN][1000 genomes]
rs10954226	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs10954230	0.81[JPT][hapmap]
rs11769045	0.84[ASN][1000 genomes]
rs11979476	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs12111832	0.84[ASN][1000 genomes]
rs12112374	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs12216567	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12534372	0.81[JPT][hapmap]
rs12540568	0.81[JPT][hapmap]
rs12667132	0.81[JPT][hapmap]
rs13226649	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13235668	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13235749	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13238161	0.90[ASN][1000 genomes]
rs1473236	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526900	0.86[JPT][hapmap]
rs1559486	0.91[JPT][hapmap]
rs1880854	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2012919	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2141075	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402944	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2566876	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2566877	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2566885	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2566886	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2694572	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2694574	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2718083	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2718084	1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2718089	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2718093	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2718096	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2718115	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2896415	0.94[ASN][1000 genomes]
rs4728163	0.81[JPT][hapmap]
rs4728164	0.81[JPT][hapmap]
rs4731566	0.95[ASN][1000 genomes]
rs4731568	0.88[ASN][1000 genomes]
rs4731572	0.81[JPT][hapmap]
rs4731575	0.80[JPT][hapmap]
rs55638303	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62480596	0.94[ASN][1000 genomes]
rs6467233	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6467237	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6467240	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6467241	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6467242	0.81[EUR][1000 genomes]
rs66970518	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67820265	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67853067	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68184415	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6942756	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966595	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs6967464	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6980385	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs721691	0.89[ASN][1000 genomes]
rs7780886	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7782348	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7788327	0.95[CEU][hapmap];0.86[JPT][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7794622	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7811141	0.89[ASN][1000 genomes]
rs822038	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs822040	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs891545	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9640854	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9641846	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9641849	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:128866000-128902200	Weak transcription	Gastric	stomach
3	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
4	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
5	chr7:128866400-128899000	Weak transcription	Ovary	ovary
6	chr7:128866600-128879000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:128866600-128880200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:128866600-128880400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:128866800-128878000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:128867000-128884200	Weak transcription	Primary T cells from cord blood	blood
13	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
15	chr7:128867600-128885600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:128867800-128878400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:128867800-128880400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:128868000-128878400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:128868400-128880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:128868800-128877800	Weak transcription	GM12878-XiMat	blood
22	chr7:128869000-128880000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:128869400-128876000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:128869800-128878000	Weak transcription	NHEK	skin
25	chr7:128869800-128880200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:128869800-128880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:128871800-128880200	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:128872600-128875800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:128873400-128880000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:128875000-128876600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:128875200-128880200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:128875400-128876400	Strong transcription	Fetal Intestine Small	intestine

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