Variant report

Variant	rs556429766
Chromosome Location	chr15:93197961-93197962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:93197794-93197994	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:93197233-93198042	HUVEC	blood vessel:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93145840..93149737-chr15:93196292..93199149,3	MCF-7	breast:
2	chr15:93197470..93197983-chr15:93226402..93227309,2	MCF-7	breast:
3	chr15:93197096..93198076-chr15:93225951..93227103,4	MCF-7	breast:
4	chr15:93197537..93199243-chr15:93427702..93429402,2	MCF-7	breast:
5	chr15:93197891..93200562-chr3:14219402..14221003,2	MCF-7	breast:
6	chr15:93187167..93190385-chr15:93197959..93201879,3	K562	blood:
7	chr15:93196488..93198404-chr17:67442282..67443797,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000154767	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000170860	Chromatin interaction
ENSG00000271763	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3374130	chr15:93197573-93200121	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:93193800-93199000	Enhancers	Fetal Heart	heart
3	chr15:93194200-93198200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:93194400-93198400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:93194600-93198400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:93195200-93199600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:93195600-93198000	Enhancers	Right Atrium	heart
8	chr15:93195800-93198400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:93196200-93198000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:93196200-93198200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:93196600-93199200	Enhancers	Fetal Brain Male	brain
12	chr15:93196800-93198000	Enhancers	Colon Smooth Muscle	Colon
13	chr15:93196800-93198000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:93196800-93198200	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr15:93196800-93198400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:93197000-93198000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:93197000-93198000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:93197000-93198200	Enhancers	Fetal Thymus	thymus
19	chr15:93197000-93198400	Enhancers	Esophagus	oesophagus
20	chr15:93197000-93199600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:93197200-93198000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr15:93197200-93198000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:93197200-93198000	Enhancers	Colonic Mucosa	Colon
24	chr15:93197200-93198200	Flanking Active TSS	HUVEC	blood vessel
25	chr15:93197200-93198400	Enhancers	Brain Substantia Nigra	brain
26	chr15:93197200-93198400	Weak transcription	Placenta	Placenta
27	chr15:93197200-93198400	Weak transcription	Spleen	Spleen
28	chr15:93197200-93199000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:93197200-93199400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:93197200-93199400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr15:93197200-93199600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:93197400-93198000	Enhancers	Primary T cells from cord blood	blood
33	chr15:93197400-93198000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr15:93197400-93198000	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr15:93197400-93198000	Enhancers	HSMMtube	muscle
36	chr15:93197400-93198200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:93197400-93198200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
38	chr15:93197400-93198200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:93197400-93198200	Flanking Active TSS	Fetal Lung	lung
40	chr15:93197400-93198400	Enhancers	Primary hematopoietic stem cells	blood
41	chr15:93197400-93198400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:93197400-93198400	Flanking Active TSS	GM12878-XiMat	blood
43	chr15:93197400-93199400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr15:93197400-93199600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr15:93197600-93198000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:93197600-93198000	Flanking Active TSS	Brain Angular Gyrus	brain
47	chr15:93197600-93198000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr15:93197600-93198000	Flanking Active TSS	Right Ventricle	heart
49	chr15:93197600-93198200	Active TSS	Fetal Brain Female	brain
50	chr15:93197600-93198200	Flanking Active TSS	Fetal Intestine Large	intestine

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