Variant report
| Variant | rs55647737 |
|---|---|
| Chromosome Location | chr3:23151478-23151479 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:22531582..22534400-chr3:23151408..23153228,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12629052 | 0.91[ASN][1000 genomes] |
| rs12630329 | 0.93[ASN][1000 genomes] |
| rs12637026 | 0.87[ASN][1000 genomes] |
| rs73037591 | 0.93[ASN][1000 genomes] |
| rs73037594 | 0.93[ASN][1000 genomes] |
| rs73040008 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73040011 | 0.94[ASN][1000 genomes] |
| rs73040017 | 0.97[ASN][1000 genomes] |
| rs73040019 | 0.96[ASN][1000 genomes] |
| rs73040026 | 0.97[ASN][1000 genomes] |
| rs73040028 | 0.97[ASN][1000 genomes] |
| rs73040032 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999882 | chr3:23121533-23257718 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006921 | chr3:23121967-23155165 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1010493 | chr3:23124392-23155165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv834636 | chr3:23138653-23301443 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:23150600-23154400 | Weak transcription | Fetal Lung | lung |
