Variant report

Variant	rs73040028
Chromosome Location	chr3:23171805-23171806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12629052	0.88[ASN][1000 genomes]
rs12630329	0.90[ASN][1000 genomes]
rs12637026	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55647737	0.97[ASN][1000 genomes]
rs73037591	0.90[ASN][1000 genomes]
rs73037594	0.90[ASN][1000 genomes]
rs73040008	0.97[ASN][1000 genomes]
rs73040011	0.91[ASN][1000 genomes]
rs73040017	0.97[ASN][1000 genomes]
rs73040019	0.96[ASN][1000 genomes]
rs73040026	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040032	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73042198	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23171000-23172000	Weak transcription	Ovary	ovary
2	chr3:23171200-23172400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:23171200-23172800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:23171400-23172000	Enhancers	Adipose Nuclei	Adipose
5	chr3:23171400-23172000	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:23171400-23172600	Enhancers	Placenta	Placenta
7	chr3:23171800-23172000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:23171800-23172400	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links