Variant report

Variant	rs556486154
Chromosome Location	chr4:172383019-172383020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214429883..214430693-chr4:172382652..172383247,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv881556	chr4:172205108-172491284	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv881483	chr4:172315768-172388728	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv880978	chr4:172315768-172405095	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv880557	chr4:172315768-172458600	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv881360	chr4:172315768-172491284	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv880315	chr4:172328758-172388728	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv881499	chr4:172331641-172388728	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv4604	chr4:172360664-172425786	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1815655	chr4:172367540-172432296	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1822088	chr4:172367540-172432296	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1825189	chr4:172367540-172432296	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1831472	chr4:172367540-172432296	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1843827	chr4:172367540-172432296	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv1025331	chr4:172369334-172387681	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv511237	chr4:172374400-172388728	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1821186	chr4:172374626-172388728	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1815196	chr4:172374626-172394198	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1844767	chr4:172374626-172394198	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1031991	chr4:172374872-172387681	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv1023480	chr4:172374872-172388469	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv1024214	chr4:172374872-172388728	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1022699	chr4:172374872-172389097	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv1809286	chr4:172375580-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1846084	chr4:172375580-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv1816975	chr4:172375682-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1844090	chr4:172375682-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1845290	chr4:172375682-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv596180	chr4:172375682-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv1848103	chr4:172376220-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv596184	chr4:172376220-172383439	Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv596185	chr4:172376220-172494233	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
37	nsv596190	chr4:172376702-172383439	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv881422	chr4:172377609-172486332	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172382400-172383200	Enhancers	HUES64 Cell Line	embryonic stem cell

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