Variant report

Variant	rs556486821
Chromosome Location	chr9:19126139-19126140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:19125987..19127822-chr9:19460752..19462438,2	MCF-7	breast:
2	chr9:19124716..19129711-chr9:19378738..19382022,6	K562	blood:
3	chr9:19125652..19127211-chr9:19148540..19150962,2	K562	blood:
4	chr9:19047624..19049710-chr9:19124952..19127835,2	MCF-7	breast:
5	chr9:19101429..19104985-chr9:19125580..19131342,7	K562	blood:
6	chr9:19047688..19050062-chr9:19125989..19129041,3	K562	blood:

Variant related genes	Relation type
ENSG00000155876	Chromatin interaction
ENSG00000147874	Chromatin interaction
ENSG00000137154	Chromatin interaction
ENSG00000231909	Chromatin interaction
ENSG00000147872	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv430003	chr9:19074740-19247826	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv870340	chr9:19077714-19143230	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018947	chr9:19094894-19394712	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
9	nsv1033552	chr9:19104662-19131866	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv8423	chr9:19125975-19128690	Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19103400-19126400	Weak transcription	Fetal Brain Male	brain
2	chr9:19110600-19126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:19113400-19126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:19114200-19126200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:19116400-19127000	Weak transcription	Stomach Mucosa	stomach
6	chr9:19117000-19127000	Weak transcription	HSMMtube	muscle
7	chr9:19118000-19126600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:19118400-19126600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:19120600-19126600	Weak transcription	Fetal Brain Female	brain
10	chr9:19121200-19126200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:19121200-19126400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:19121200-19127000	Weak transcription	Brain Angular Gyrus	brain
13	chr9:19121400-19126200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:19121400-19127000	Weak transcription	Brain Anterior Caudate	brain
15	chr9:19121600-19126600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:19121800-19127000	Weak transcription	Aorta	Aorta
17	chr9:19122400-19126400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:19122800-19126400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:19123000-19126200	Transcr. at gene 5' and 3'	HepG2	liver
20	chr9:19123000-19126400	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:19123000-19127000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr9:19123200-19126200	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:19123400-19126400	Weak transcription	Ovary	ovary
24	chr9:19123600-19126200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr9:19123600-19126200	Weak transcription	Brain Substantia Nigra	brain
26	chr9:19123600-19126400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:19123600-19126400	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
28	chr9:19123600-19126400	Genic enhancers	Fetal Thymus	thymus
29	chr9:19123600-19126400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:19123600-19126600	Weak transcription	Fetal Lung	lung
31	chr9:19123600-19126600	Weak transcription	A549	lung
32	chr9:19123600-19126600	Weak transcription	HSMM	muscle
33	chr9:19123600-19126800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:19123800-19126200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:19123800-19126200	Weak transcription	Fetal Kidney	kidney
36	chr9:19123800-19126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:19124000-19126200	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
38	chr9:19124000-19126400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
39	chr9:19124000-19126400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:19124000-19126400	Transcr. at gene 5' and 3'	Placenta	Placenta
41	chr9:19124000-19126600	Transcr. at gene 5' and 3'	Liver	Liver
42	chr9:19124200-19126200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
43	chr9:19124200-19126400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:19124200-19126400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
45	chr9:19124400-19126200	Weak transcription	Primary B cells from cord blood	blood
46	chr9:19124400-19126200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr9:19124400-19126400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:19124400-19126400	Transcr. at gene 5' and 3'	Osteobl	bone
49	chr9:19124400-19127200	Weak transcription	HMEC	breast
50	chr9:19124600-19126200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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