Variant report

Variant	rs55648739
Chromosome Location	chr15:73679368-73679369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57146159	0.90[AFR][1000 genomes]
rs57281328	1.00[AMR][1000 genomes]
rs74022962	0.90[AFR][1000 genomes]
rs74022963	0.90[AFR][1000 genomes]
rs74022965	0.84[AFR][1000 genomes]
rs74022966	0.90[AFR][1000 genomes]
rs74022968	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1823194	chr15:73660092-73680301	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73674600-73680000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:73676200-73679400	Weak transcription	Right Atrium	heart
3	chr15:73676200-73681600	Weak transcription	Right Ventricle	heart
4	chr15:73677400-73680200	Enhancers	Fetal Heart	heart
5	chr15:73677800-73679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:73678400-73679400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr15:73678600-73679400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:73678600-73679600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:73678600-73681000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:73678600-73681000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:73678800-73679600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:73678800-73679600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr15:73678800-73680200	Weak transcription	Fetal Intestine Small	intestine
14	chr15:73678800-73682800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:73679000-73680000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:73679000-73681200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:73679200-73680800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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