Variant report

Variant	rs74022965
Chromosome Location	chr15:73678134-73678135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73672396..73674287-chr15:73677833..73681089,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1481090	1.00[AMR][1000 genomes]
rs1481091	1.00[AMR][1000 genomes]
rs16957732	1.00[AMR][1000 genomes]
rs16957934	1.00[AMR][1000 genomes]
rs16958044	1.00[AMR][1000 genomes]
rs55648739	0.84[AFR][1000 genomes]
rs55934100	1.00[AMR][1000 genomes]
rs56194104	1.00[AMR][1000 genomes]
rs56690670	1.00[AMR][1000 genomes]
rs56989932	1.00[AMR][1000 genomes]
rs57084669	1.00[AMR][1000 genomes]
rs57104045	1.00[AMR][1000 genomes]
rs57146159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58054552	1.00[AMR][1000 genomes]
rs58534827	1.00[AMR][1000 genomes]
rs59520398	1.00[AMR][1000 genomes]
rs60064354	1.00[AMR][1000 genomes]
rs60317955	1.00[AMR][1000 genomes]
rs60596031	1.00[AMR][1000 genomes]
rs61686754	1.00[AMR][1000 genomes]
rs62641690	1.00[AMR][1000 genomes]
rs74022931	1.00[AMR][1000 genomes]
rs74022955	1.00[AMR][1000 genomes]
rs74022960	1.00[AMR][1000 genomes]
rs74022962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022966	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022993	1.00[AMR][1000 genomes]
rs74026205	1.00[AMR][1000 genomes]
rs74026206	1.00[AMR][1000 genomes]
rs74026220	1.00[AMR][1000 genomes]
rs74026224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1823194	chr15:73660092-73680301	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73674600-73680000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:73675000-73678600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73676200-73679400	Weak transcription	Right Atrium	heart
4	chr15:73676200-73681600	Weak transcription	Right Ventricle	heart
5	chr15:73676600-73678800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:73677400-73680200	Enhancers	Fetal Heart	heart
7	chr15:73677800-73679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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