Variant report
| Variant | rs16957934 |
|---|---|
| Chromosome Location | chr15:73791195-73791196 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:73775861..73777735-chr15:73790397..73792808,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000259186 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1481090 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1481091 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16957732 | 1.00[AMR][1000 genomes] |
| rs16958030 | 0.81[AFR][1000 genomes] |
| rs16958044 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56194104 | 1.00[AMR][1000 genomes] |
| rs56690670 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57084669 | 1.00[AMR][1000 genomes] |
| rs57146159 | 1.00[AMR][1000 genomes] |
| rs58054552 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59520398 | 1.00[AMR][1000 genomes] |
| rs60064354 | 1.00[AMR][1000 genomes] |
| rs60317955 | 1.00[AMR][1000 genomes] |
| rs60596031 | 1.00[AMR][1000 genomes] |
| rs62641690 | 1.00[AMR][1000 genomes] |
| rs74022931 | 1.00[AMR][1000 genomes] |
| rs74022955 | 1.00[AMR][1000 genomes] |
| rs74022960 | 1.00[AMR][1000 genomes] |
| rs74022962 | 1.00[AMR][1000 genomes] |
| rs74022963 | 1.00[AMR][1000 genomes] |
| rs74022965 | 1.00[AMR][1000 genomes] |
| rs74022966 | 1.00[AMR][1000 genomes] |
| rs74022968 | 1.00[AMR][1000 genomes] |
| rs74022993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74026205 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74026206 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74026220 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74026224 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037540 | chr15:73712637-73982420 | Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv525433 | chr15:73766072-73833600 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
