Variant report

Variant	rs74026205
Chromosome Location	chr15:73807115-73807116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1481090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1481091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16958030	0.88[AFR][1000 genomes]
rs16958044	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56194104	1.00[AMR][1000 genomes]
rs56690670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57084669	1.00[AMR][1000 genomes]
rs57146159	1.00[AMR][1000 genomes]
rs58054552	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59520398	1.00[AMR][1000 genomes]
rs60064354	1.00[AMR][1000 genomes]
rs60118056	0.82[AFR][1000 genomes]
rs60317955	1.00[AMR][1000 genomes]
rs60596031	1.00[AMR][1000 genomes]
rs62641690	1.00[AMR][1000 genomes]
rs74022931	1.00[AMR][1000 genomes]
rs74022955	1.00[AMR][1000 genomes]
rs74022960	1.00[AMR][1000 genomes]
rs74022962	1.00[AMR][1000 genomes]
rs74022963	1.00[AMR][1000 genomes]
rs74022965	1.00[AMR][1000 genomes]
rs74022966	1.00[AMR][1000 genomes]
rs74022968	1.00[AMR][1000 genomes]
rs74022993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73805600-73809200	Weak transcription	Right Atrium	heart
2	chr15:73806800-73807200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:73806800-73807200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73806800-73807400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:73806800-73807600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:73807000-73807200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr15:73807000-73809200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:73807000-73809400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:73807000-73809600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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