Variant report

Variant	rs57084669
Chromosome Location	chr15:73655599-73655600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73655148..73657136-chr15:73673095..73675743,2	MCF-7	breast:
2	chr15:73653780..73658080-chr15:73658214..73662015,4	MCF-7	breast:
3	chr15:73644236..73646707-chr15:73654273..73657085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138622	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1481090	1.00[AMR][1000 genomes]
rs1481091	1.00[AMR][1000 genomes]
rs16957672	0.86[AFR][1000 genomes]
rs16957732	1.00[AMR][1000 genomes]
rs16957934	1.00[AMR][1000 genomes]
rs16958044	1.00[AMR][1000 genomes]
rs55934100	1.00[AMR][1000 genomes]
rs56194104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56690670	1.00[AMR][1000 genomes]
rs56989932	1.00[AMR][1000 genomes]
rs57026130	0.82[AFR][1000 genomes]
rs57104045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57146159	1.00[AMR][1000 genomes]
rs58054552	1.00[AMR][1000 genomes]
rs58534827	1.00[AMR][1000 genomes]
rs59520398	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60064354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60317955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60596031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61686754	1.00[AMR][1000 genomes]
rs62641690	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022930	0.81[AFR][1000 genomes]
rs74022931	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022932	0.81[AFR][1000 genomes]
rs74022955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022960	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022962	1.00[AMR][1000 genomes]
rs74022963	1.00[AMR][1000 genomes]
rs74022965	1.00[AMR][1000 genomes]
rs74022966	1.00[AMR][1000 genomes]
rs74022968	1.00[AMR][1000 genomes]
rs74022993	1.00[AMR][1000 genomes]
rs74026205	1.00[AMR][1000 genomes]
rs74026206	1.00[AMR][1000 genomes]
rs74026220	1.00[AMR][1000 genomes]
rs74026224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73644800-73655800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73651200-73655600	Enhancers	Left Ventricle	heart
3	chr15:73651200-73659000	Weak transcription	Pancreas	Pancrea
4	chr15:73651600-73658600	Enhancers	Right Ventricle	heart
5	chr15:73653200-73657200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:73653600-73656200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:73653600-73656400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:73653800-73655800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73653800-73656200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:73654000-73656600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:73654200-73656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:73654200-73656200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:73654200-73656400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:73654200-73656400	Weak transcription	Fetal Brain Male	brain
15	chr15:73654600-73657800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:73654800-73655600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:73654800-73656000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:73655000-73655800	Enhancers	GM12878-XiMat	blood
19	chr15:73655000-73656200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:73655000-73656400	Enhancers	Right Atrium	heart
21	chr15:73655400-73655800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:73655400-73655800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:73655400-73656000	Enhancers	Fetal Brain Female	brain
24	chr15:73655400-73657000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:73655400-73657200	Enhancers	Fetal Heart	heart

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