Variant report

Variant	rs16957732
Chromosome Location	chr15:73562977-73562978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73556714..73560483-chr15:73561340..73564858,6	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16957726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16957746	1.00[ASN][1000 genomes]
rs16957934	1.00[AMR][1000 genomes]
rs3743488	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41415044	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs55934100	1.00[AMR][1000 genomes]
rs56194104	1.00[AMR][1000 genomes]
rs56989932	1.00[AMR][1000 genomes]
rs57084669	1.00[AMR][1000 genomes]
rs57104045	1.00[AMR][1000 genomes]
rs57146159	1.00[AMR][1000 genomes]
rs58054552	1.00[AMR][1000 genomes]
rs58534827	1.00[AMR][1000 genomes]
rs59520398	1.00[AMR][1000 genomes]
rs60064354	1.00[AMR][1000 genomes]
rs60317955	1.00[AMR][1000 genomes]
rs60596031	1.00[AMR][1000 genomes]
rs61686754	1.00[AMR][1000 genomes]
rs62641690	1.00[AMR][1000 genomes]
rs74022931	1.00[AMR][1000 genomes]
rs74022955	1.00[AMR][1000 genomes]
rs74022960	1.00[AMR][1000 genomes]
rs74022962	1.00[AMR][1000 genomes]
rs74022963	1.00[AMR][1000 genomes]
rs74022965	1.00[AMR][1000 genomes]
rs74022966	1.00[AMR][1000 genomes]
rs74022968	1.00[AMR][1000 genomes]
rs74022993	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
8	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:73546800-73563000	Weak transcription	Right Ventricle	heart
14	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
16	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:73548200-73575000	Weak transcription	Gastric	stomach
19	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
20	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
21	chr15:73549200-73565400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:73549200-73565400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
24	chr15:73549200-73575200	Weak transcription	Lung	lung
25	chr15:73550800-73581400	Weak transcription	HMEC	breast
26	chr15:73551600-73565600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
28	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
29	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
30	chr15:73553800-73581200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:73555000-73570600	Weak transcription	Liver	Liver
32	chr15:73555200-73575600	Weak transcription	Colonic Mucosa	Colon
33	chr15:73557800-73564800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:73557800-73567800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73558600-73564000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:73558800-73563800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:73558800-73565000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:73559200-73566200	Weak transcription	Ovary	ovary
39	chr15:73559600-73563800	Weak transcription	Fetal Intestine Small	intestine
40	chr15:73559600-73564800	Weak transcription	Fetal Stomach	stomach
41	chr15:73560400-73563200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:73560400-73563800	Strong transcription	Fetal Lung	lung
43	chr15:73560800-73563200	Strong transcription	Fetal Kidney	kidney
44	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr15:73561000-73563200	Strong transcription	Fetal Brain Female	brain
46	chr15:73561000-73563200	Strong transcription	Rectal Smooth Muscle	rectum
47	chr15:73561000-73563400	Strong transcription	Adipose Nuclei	Adipose
48	chr15:73561000-73563400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr15:73561000-73563400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:73561000-73566800	Strong transcription	Duodenum Mucosa	Duodenum

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