Variant report

Variant	rs57104045
Chromosome Location	chr15:73515554-73515555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16957672	1.00[AFR][1000 genomes]
rs16957732	1.00[AMR][1000 genomes]
rs55934100	1.00[AMR][1000 genomes]
rs56194104	1.00[AMR][1000 genomes]
rs56989932	1.00[AMR][1000 genomes]
rs57026130	0.95[AFR][1000 genomes]
rs57084669	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57146159	1.00[AMR][1000 genomes]
rs58534827	1.00[AMR][1000 genomes]
rs59520398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60064354	1.00[AMR][1000 genomes]
rs60317955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60596031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61686754	1.00[AMR][1000 genomes]
rs62641690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022930	0.95[AFR][1000 genomes]
rs74022931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022932	0.85[AFR][1000 genomes]
rs74022955	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74022960	1.00[AMR][1000 genomes]
rs74022962	1.00[AMR][1000 genomes]
rs74022963	1.00[AMR][1000 genomes]
rs74022965	1.00[AMR][1000 genomes]
rs74022966	1.00[AMR][1000 genomes]
rs74022968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
2	chr15:73475200-73517600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:73492200-73518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73492400-73516200	Weak transcription	Fetal Brain Male	brain
6	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:73497000-73517600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
9	chr15:73502800-73517200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:73509400-73525000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:73509600-73528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:73514200-73517400	Weak transcription	Fetal Intestine Small	intestine
13	chr15:73514400-73516200	Weak transcription	Fetal Stomach	stomach
14	chr15:73514400-73516400	Weak transcription	Fetal Intestine Large	intestine
15	chr15:73514800-73516400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:73514800-73517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:73515000-73517600	Weak transcription	Brain Substantia Nigra	brain
18	chr15:73515400-73516800	Weak transcription	Fetal Lung	lung
19	chr15:73515400-73517600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73515400-73517800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:73515400-73518400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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