Variant report

Variant	rs58054552
Chromosome Location	chr15:73774644-73774645
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1481090	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1481091	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957732	1.00[AMR][1000 genomes]
rs16957934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16958030	0.93[AFR][1000 genomes]
rs16958044	1.00[AMR][1000 genomes]
rs55934100	1.00[AMR][1000 genomes]
rs56194104	1.00[AMR][1000 genomes]
rs56690670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57084669	1.00[AMR][1000 genomes]
rs57146159	1.00[AMR][1000 genomes]
rs59520398	1.00[AMR][1000 genomes]
rs60064354	1.00[AMR][1000 genomes]
rs60118056	0.86[AFR][1000 genomes]
rs60317955	1.00[AMR][1000 genomes]
rs60596031	1.00[AMR][1000 genomes]
rs61686754	1.00[AMR][1000 genomes]
rs62641690	1.00[AMR][1000 genomes]
rs74022931	1.00[AMR][1000 genomes]
rs74022955	1.00[AMR][1000 genomes]
rs74022960	1.00[AMR][1000 genomes]
rs74022962	1.00[AMR][1000 genomes]
rs74022963	1.00[AMR][1000 genomes]
rs74022965	1.00[AMR][1000 genomes]
rs74022966	1.00[AMR][1000 genomes]
rs74022968	1.00[AMR][1000 genomes]
rs74022993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026205	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026206	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026220	1.00[AMR][1000 genomes]
rs74026224	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73773800-73775400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:73774200-73775200	Enhancers	K562	blood
3	chr15:73774400-73774800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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