Variant report

Variant	rs55649528
Chromosome Location	chr4:143163180-143163181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143161536..143163187-chr4:143167916..143169950,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10004835	0.85[AMR][1000 genomes]
rs10025393	0.85[AMR][1000 genomes]
rs13107751	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13139397	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13148456	0.85[AMR][1000 genomes]
rs13150427	0.85[AMR][1000 genomes]
rs13152233	0.84[AMR][1000 genomes]
rs2055212	0.81[EUR][1000 genomes]
rs2055213	0.81[EUR][1000 genomes]
rs34204414	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34564415	0.90[AMR][1000 genomes]
rs34733226	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35107973	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35214831	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35390852	0.85[AMR][1000 genomes]
rs3775666	0.80[AMR][1000 genomes]
rs3775670	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3775671	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3775680	0.80[AMR][1000 genomes]
rs66600816	0.85[AMR][1000 genomes]
rs67039841	0.85[AMR][1000 genomes]
rs67997859	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143129200-143169600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:143135400-143184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:143151000-143185000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:143151200-143174000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:143153800-143181000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143157600-143173800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:143158200-143173600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:143158400-143163800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:143158400-143174000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:143158600-143163400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:143158600-143173800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:143159200-143181000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:143159200-143181000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:143160200-143171000	Weak transcription	NHEK	skin
16	chr4:143160400-143163600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:143160400-143163800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:143160400-143164000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:143160400-143167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:143160400-143180000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:143160600-143163800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:143160600-143163800	Weak transcription	HSMMtube	muscle
23	chr4:143160600-143163800	Weak transcription	NHDF-Ad	bronchial
24	chr4:143160600-143185000	Weak transcription	HMEC	breast
25	chr4:143160600-143186400	Weak transcription	HSMM	muscle
26	chr4:143161000-143163200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:143161000-143163400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:143162400-143163200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:143162400-143164400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:143162600-143163200	Enhancers	Colon Smooth Muscle	Colon
31	chr4:143162600-143163800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr4:143162800-143163600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:143162800-143164000	Enhancers	Osteobl	bone
34	chr4:143163000-143163200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:143163000-143163800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:143163000-143164800	Strong transcription	Primary T cells from cord blood	blood
37	chr4:143163000-143164800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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