Variant report

Variant	rs67039841
Chromosome Location	chr4:143083125-143083126
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13107751	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13139397	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13148456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13150427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13152233	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2055212	0.87[EUR][1000 genomes]
rs2055213	0.87[EUR][1000 genomes]
rs34117773	0.89[ASN][1000 genomes]
rs34204414	0.85[AMR][1000 genomes]
rs34564415	0.80[AMR][1000 genomes]
rs34733226	0.85[AMR][1000 genomes]
rs35107973	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35390852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775666	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3775670	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3775671	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55649528	0.85[AMR][1000 genomes]
rs67997859	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143018800-143109600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:143043400-143089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:143049800-143114400	Weak transcription	Right Ventricle	heart
4	chr4:143051400-143093400	Weak transcription	Left Ventricle	heart
5	chr4:143052400-143111600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:143052600-143094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:143057800-143114400	Weak transcription	Aorta	Aorta
8	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:143061800-143102200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:143064200-143093200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:143069800-143112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:143070400-143134400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:143071000-143117800	Weak transcription	Psoas Muscle	Psoas
14	chr4:143072000-143137000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:143073000-143087400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:143075200-143085600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr4:143076800-143083800	Weak transcription	NH-A	brain
18	chr4:143076800-143107200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:143076800-143113200	Weak transcription	Pancreas	Pancrea
20	chr4:143077600-143084800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:143077800-143084000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:143078200-143103400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:143078400-143083200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr4:143078400-143085000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:143078600-143085000	Strong transcription	Primary T cells from cord blood	blood
26	chr4:143078600-143085800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:143078800-143083200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:143079000-143083200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:143079000-143085200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:143079200-143093000	Weak transcription	Osteobl	bone
31	chr4:143079600-143084400	Weak transcription	Esophagus	oesophagus
32	chr4:143079600-143093600	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:143080400-143083200	Strong transcription	HSMMtube	muscle
34	chr4:143080800-143083200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:143080800-143085000	Strong transcription	Dnd41	blood
36	chr4:143081000-143128200	Weak transcription	NHDF-Ad	bronchial
37	chr4:143081800-143089600	Weak transcription	NHEK	skin
38	chr4:143081800-143090400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:143081800-143091600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:143082000-143091400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:143082000-143091800	Weak transcription	HSMM	muscle
42	chr4:143082000-143092800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:143082000-143130000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr4:143082200-143083600	Weak transcription	Fetal Heart	heart
45	chr4:143082400-143095000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr4:143082400-143134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:143082600-143084800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:143082600-143092800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:143082600-143094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:143082800-143083200	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links