The 2.0 version of rSNPBase

Variant report

Variant rs55650525
Chromosome Location chr20:22774876-22774877
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:22770400-22775400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:22770600-22775800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr20:22771000-22775400 Weak transcription Fetal Muscle Trunk muscle
4 chr20:22771000-22776000 Weak transcription Ovary ovary
5 chr20:22772000-22778600 Enhancers HMEC breast
6 chr20:22772200-22777400 Enhancers Placenta Placenta
7 chr20:22772800-22775400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr20:22773000-22775000 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr20:22773800-22776000 Weak transcription Right Atrium heart
10 chr20:22774000-22776600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr20:22774000-22778200 Enhancers Placenta Amnion Placenta Amnion
12 chr20:22774200-22775600 Enhancers A549 lung
13 chr20:22774200-22776000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr20:22774200-22778600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr20:22774200-22778600 Enhancers Fetal Muscle Leg muscle
16 chr20:22774200-22778600 Enhancers HUVEC blood vessel
17 chr20:22774400-22775400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr20:22774400-22778400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr20:22774600-22775000 Weak transcription HSMM muscle
20 chr20:22774600-22776200 Enhancers HSMMtube muscle
21 chr20:22774600-22776800 Enhancers Stomach Mucosa stomach
22 chr20:22774600-22777600 Enhancers Hela-S3 cervix
23 chr20:22774800-22775000 Enhancers Skeletal Muscle Male skeletal muscle
24 chr20:22774800-22775000 Enhancers NHLF lung
25 chr20:22774800-22776200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr20:22774800-22776200 Enhancers Muscle Satellite Cultured Cells --
27 chr20:22774800-22776400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr20:22774800-22776600 Enhancers Aorta Aorta
29 chr20:22774800-22777400 Enhancers Breast Myoepithelial Primary Cells Breast
30 chr20:22774800-22777400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr20:22774800-22777800 Enhancers Fetal Stomach stomach
32 chr20:22774800-22778800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr20:22774800-22779000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr20:22774800-22779000 Enhancers NHEK skin

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Last update: Aug 31, 2015