Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22770829..22772880-chr20:22773883..22775760,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11087397	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11699192	0.87[ASN][1000 genomes]
rs11906944	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16984461	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143903	0.87[ASN][1000 genomes]
rs2143904	0.82[ASN][1000 genomes]
rs2207169	0.87[ASN][1000 genomes]
rs2404492	0.84[ASN][1000 genomes]
rs34023416	0.87[ASN][1000 genomes]
rs55650525	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6075954	0.82[ASN][1000 genomes]
rs6075955	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6075956	0.87[ASN][1000 genomes]
rs6075962	0.87[ASN][1000 genomes]
rs6075964	0.87[ASN][1000 genomes]
rs6075965	0.87[ASN][1000 genomes]
rs6075966	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6082837	0.87[ASN][1000 genomes]
rs6082838	0.87[ASN][1000 genomes]
rs6082839	0.87[ASN][1000 genomes]
rs6082840	0.87[ASN][1000 genomes]
rs6082841	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7353078	0.84[ASN][1000 genomes]
rs73900571	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv520547	chr20:22767280-22771404	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22758000-22772000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:22770400-22775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:22770600-22772000	Weak transcription	A549	lung
4	chr20:22770600-22775800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:22770800-22772200	Weak transcription	Placenta	Placenta
6	chr20:22771000-22772200	Weak transcription	Fetal Stomach	stomach
7	chr20:22771000-22774200	Weak transcription	Aorta	Aorta
8	chr20:22771000-22774200	Weak transcription	Fetal Muscle Leg	muscle
9	chr20:22771000-22775400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr20:22771000-22776000	Weak transcription	Ovary	ovary

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