Variant report

Variant	rs55655908
Chromosome Location	chr7:48455511-48455512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1368654	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17662082	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17662100	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17662106	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17662118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17729579	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17729597	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17729627	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17729647	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1865195	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1865196	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28533168	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28647224	0.82[AMR][1000 genomes]
rs28754827	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55661481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56233541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56372930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62447260	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447261	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447262	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447263	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447264	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447265	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447266	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62447267	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62447268	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447269	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447270	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447271	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447272	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447273	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62447274	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62449234	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62449236	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62449237	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62449238	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6951337	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6951346	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6955839	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6966506	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6966723	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6967055	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6970040	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73099365	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7785052	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7785745	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7789493	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv533811	chr7:48313757-48482470	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48440200-48460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:48447600-48457400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48449400-48467800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:48452200-48460200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:48454000-48458400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:48454400-48458600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:48454800-48458600	Weak transcription	HMEC	breast
8	chr7:48454800-48458600	Weak transcription	NHEK	skin

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