Variant report

Variant	rs55656241
Chromosome Location	chr4:85528894-85528895
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85522392..85524948-chr4:85526701..85529127,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17367226	0.86[EUR][1000 genomes]
rs34855553	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41282379	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
2	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:85515800-85530600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:85517800-85531400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:85518000-85530600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:85518000-85531200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:85518200-85529800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:85518600-85536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
11	chr4:85518800-85531000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:85519000-85530600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:85519000-85536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:85520400-85529200	Weak transcription	Fetal Intestine Large	intestine
15	chr4:85520400-85529800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
17	chr4:85524400-85530800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:85524600-85536400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:85524600-85536400	Weak transcription	Esophagus	oesophagus
20	chr4:85524800-85533800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
22	chr4:85526800-85583000	Weak transcription	Gastric	stomach
23	chr4:85527200-85529600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:85527200-85530000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:85527200-85530600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr4:85527800-85529600	Weak transcription	Brain Anterior Caudate	brain
27	chr4:85527800-85535400	Strong transcription	Fetal Intestine Small	intestine
28	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
29	chr4:85528400-85529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:85528400-85529200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:85528400-85531200	Weak transcription	NHEK	skin
32	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
33	chr4:85528600-85529600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:85528600-85530600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:85528800-85530400	Weak transcription	HMEC	breast
36	chr4:85528800-85534600	Weak transcription	Right Ventricle	heart

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