Variant report

Variant	rs55657903
Chromosome Location	chr3:154740964-154740965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11921762	1.00[AMR][1000 genomes]
rs11923608	1.00[AMR][1000 genomes]
rs11925973	1.00[AMR][1000 genomes]
rs11927135	1.00[AMR][1000 genomes]
rs55954373	1.00[AMR][1000 genomes]
rs56072333	1.00[AMR][1000 genomes]
rs57231033	1.00[AMR][1000 genomes]
rs58662380	1.00[AMR][1000 genomes]
rs60197267	1.00[AMR][1000 genomes]
rs60995161	1.00[AMR][1000 genomes]
rs61064256	1.00[AMR][1000 genomes]
rs61281054	1.00[AMR][1000 genomes]
rs61489236	1.00[AMR][1000 genomes]
rs61761163	1.00[AMR][1000 genomes]
rs6770028	1.00[AMR][1000 genomes]
rs6799870	1.00[AMR][1000 genomes]
rs73874461	1.00[AMR][1000 genomes]
rs73874463	1.00[AMR][1000 genomes]
rs73874467	1.00[AMR][1000 genomes]
rs73874471	1.00[AMR][1000 genomes]
rs73874479	1.00[AMR][1000 genomes]
rs73874488	1.00[AMR][1000 genomes]
rs73874497	1.00[AMR][1000 genomes]
rs7632185	1.00[AMR][1000 genomes]
rs7652075	1.00[AMR][1000 genomes]
rs9917790	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154734600-154744400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:154737400-154744200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:154737800-154741000	Weak transcription	Placenta	Placenta
4	chr3:154737800-154741600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:154737800-154741600	Weak transcription	K562	blood
6	chr3:154737800-154741800	Weak transcription	HUVEC	blood vessel
7	chr3:154737800-154742800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:154737800-154744400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:154737800-154745000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:154738000-154744200	Weak transcription	Fetal Intestine Large	intestine
11	chr3:154738200-154748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:154738800-154744400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:154739600-154742400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:154740000-154744800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:154740200-154741200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:154740200-154742600	Enhancers	Fetal Kidney	kidney
17	chr3:154740400-154741000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:154740400-154742000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:154740800-154742000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:154740800-154742200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:154740800-154742400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:154740800-154743800	Weak transcription	Fetal Intestine Small	intestine

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