Variant report

Variant	rs7652075
Chromosome Location	chr3:154743924-154743925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11921762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923608	1.00[AMR][1000 genomes]
rs11925973	1.00[AMR][1000 genomes]
rs11927135	1.00[AMR][1000 genomes]
rs55657903	1.00[AMR][1000 genomes]
rs55954373	1.00[AMR][1000 genomes]
rs56072333	1.00[AMR][1000 genomes]
rs57231033	1.00[AMR][1000 genomes]
rs58662380	1.00[AMR][1000 genomes]
rs60197267	1.00[AMR][1000 genomes]
rs60995161	1.00[AMR][1000 genomes]
rs61064256	1.00[AMR][1000 genomes]
rs61281054	1.00[AMR][1000 genomes]
rs61489236	1.00[AMR][1000 genomes]
rs61761163	1.00[AMR][1000 genomes]
rs6770028	1.00[AMR][1000 genomes]
rs6799870	1.00[AMR][1000 genomes]
rs73874461	1.00[AMR][1000 genomes]
rs73874463	1.00[AMR][1000 genomes]
rs73874467	1.00[AMR][1000 genomes]
rs73874471	1.00[AMR][1000 genomes]
rs73874479	1.00[AMR][1000 genomes]
rs73874488	1.00[AMR][1000 genomes]
rs73874497	1.00[AMR][1000 genomes]
rs7632185	1.00[AMR][1000 genomes]
rs9917790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154734600-154744400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:154737400-154744200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:154737800-154744400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:154737800-154745000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:154738000-154744200	Weak transcription	Fetal Intestine Large	intestine
6	chr3:154738200-154748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:154738800-154744400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:154740000-154744800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:154741600-154746400	Enhancers	K562	blood
10	chr3:154742200-154744200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:154742200-154744400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:154742200-154744400	Weak transcription	Osteobl	bone
13	chr3:154742400-154744600	Weak transcription	HUVEC	blood vessel
14	chr3:154742400-154746000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:154742600-154744200	Weak transcription	Primary B cells from cord blood	blood
16	chr3:154742600-154744400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:154743000-154744400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:154743200-154745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:154743400-154744000	Weak transcription	Adipose Nuclei	Adipose
20	chr3:154743800-154744400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:154743800-154744400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr3:154743800-154744600	Enhancers	Small Intestine	intestine
23	chr3:154743800-154744600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr3:154743800-154745400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:154743800-154745400	Enhancers	Fetal Intestine Small	intestine
26	chr3:154743800-154745400	Enhancers	Placenta	Placenta
27	chr3:154743800-154745600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:154743800-154747000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links