Variant report

Variant	rs556611714
Chromosome Location	chr15:77708007-77708008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:77707711-77708144	NB4	blood:	n/a	n/a
2	MYC	chr15:77707762-77708175	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77702853..77706237-chr15:77706527..77708848,4	K562	blood:
2	chr15:77700084..77701630-chr15:77707595..77709456,2	K562	blood:

Variant related genes	Relation type
HMG20A	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv21291	chr15:77707945-77712363	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:77695600-77709200	Weak transcription	HMEC	breast
3	chr15:77695800-77709400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:77696200-77708200	Weak transcription	HSMM	muscle
5	chr15:77698600-77711200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:77702200-77709400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:77702600-77711000	Weak transcription	Lung	lung
8	chr15:77702800-77709000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:77702800-77709400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:77702800-77711000	Weak transcription	Aorta	Aorta
11	chr15:77703000-77711400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:77703200-77710800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:77703400-77710000	Weak transcription	Thymus	Thymus
14	chr15:77704400-77709400	Weak transcription	Fetal Intestine Small	intestine
15	chr15:77704400-77709800	Weak transcription	HepG2	liver
16	chr15:77704400-77710000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:77704600-77709400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:77704800-77710800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:77705600-77708200	Weak transcription	HSMMtube	muscle
20	chr15:77706000-77708200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:77706400-77709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:77706600-77708200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:77706600-77710400	Weak transcription	Stomach Mucosa	stomach
24	chr15:77707200-77708200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:77707200-77708200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:77707200-77708200	Enhancers	Primary T cells from cord blood	blood
27	chr15:77707200-77708800	Enhancers	Brain Cingulate Gyrus	brain
28	chr15:77707200-77709000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr15:77707200-77709400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:77707200-77709400	Enhancers	Adipose Nuclei	Adipose
31	chr15:77707200-77709600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:77707200-77710600	Enhancers	Fetal Heart	heart
33	chr15:77707200-77710800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:77707400-77708400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
35	chr15:77707400-77708800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:77707600-77708200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:77707600-77708400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr15:77707600-77708400	Enhancers	Primary hematopoietic stem cells	blood
39	chr15:77707600-77709600	Enhancers	HUVEC	blood vessel
40	chr15:77707600-77710200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr15:77707600-77710200	Enhancers	Psoas Muscle	Psoas
42	chr15:77707600-77710400	Enhancers	Right Ventricle	heart
43	chr15:77707600-77710600	Enhancers	Ovary	ovary
44	chr15:77707800-77708200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr15:77707800-77708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:77707800-77708200	Enhancers	Gastric	stomach
47	chr15:77707800-77708200	Enhancers	Left Ventricle	heart
48	chr15:77707800-77708200	Enhancers	Pancreas	Pancrea
49	chr15:77707800-77708200	Enhancers	Rectal Smooth Muscle	rectum
50	chr15:77707800-77708200	Enhancers	Right Atrium	heart

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