Variant report

Variant	rs55663020
Chromosome Location	chr1:222216873-222216874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10779458	1.00[AMR][1000 genomes]
rs4846730	1.00[AMR][1000 genomes]
rs57474116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61470357	0.93[AFR][1000 genomes]
rs74147368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
2	chr1:222214600-222218000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:222215200-222218000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:222215200-222218000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:222215200-222218200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:222215200-222218400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:222215200-222219400	Enhancers	HSMMtube	muscle
8	chr1:222215200-222219600	Enhancers	HSMM	muscle
9	chr1:222215800-222217200	Enhancers	Stomach Smooth Muscle	stomach
10	chr1:222215800-222218000	Enhancers	Fetal Stomach	stomach
11	chr1:222215800-222218200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:222216200-222217200	Enhancers	Psoas Muscle	Psoas
13	chr1:222216200-222218000	Enhancers	Colon Smooth Muscle	Colon
14	chr1:222216200-222218200	Enhancers	Fetal Muscle Leg	muscle
15	chr1:222216400-222217600	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:222216600-222217000	Enhancers	Right Ventricle	heart
17	chr1:222216600-222217000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr1:222216600-222217200	Enhancers	Liver	Liver
19	chr1:222216600-222217200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr1:222216600-222217200	Enhancers	Lung	lung
21	chr1:222216600-222217200	Enhancers	Right Atrium	heart
22	chr1:222216600-222217400	Enhancers	Aorta	Aorta
23	chr1:222216600-222217400	Enhancers	Fetal Muscle Trunk	muscle
24	chr1:222216600-222217600	Enhancers	NH-A	brain
25	chr1:222216600-222218000	Enhancers	Brain Anterior Caudate	brain
26	chr1:222216600-222218000	Enhancers	Brain Cingulate Gyrus	brain
27	chr1:222216600-222218000	Enhancers	Brain Hippocampus Middle	brain
28	chr1:222216600-222218000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr1:222216600-222218200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:222216600-222218200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:222216600-222218200	Enhancers	NHDF-Ad	bronchial
32	chr1:222216600-222218200	Enhancers	Osteobl	bone
33	chr1:222216600-222219000	Enhancers	Left Ventricle	heart
34	chr1:222216800-222217000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:222216800-222217400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:222216800-222217800	Enhancers	Brain Angular Gyrus	brain
37	chr1:222216800-222217800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:222216800-222217800	Enhancers	Fetal Brain Male	brain
39	chr1:222216800-222218000	Enhancers	Brain Substantia Nigra	brain
40	chr1:222216800-222218000	Enhancers	NHLF	lung
41	chr1:222216800-222218200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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