Variant report

Variant	rs74147368
Chromosome Location	chr1:222211976-222211977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10779458	1.00[AMR][1000 genomes]
rs1078502	0.95[ASN][1000 genomes]
rs1339871	0.96[ASN][1000 genomes]
rs17011186	0.96[ASN][1000 genomes]
rs17011190	0.96[ASN][1000 genomes]
rs17011199	0.96[ASN][1000 genomes]
rs17011200	0.88[ASN][1000 genomes]
rs17011202	0.96[ASN][1000 genomes]
rs17011219	1.00[ASN][1000 genomes]
rs17011229	1.00[ASN][1000 genomes]
rs17011236	1.00[ASN][1000 genomes]
rs2790759	0.96[ASN][1000 genomes]
rs3003898	1.00[AMR][1000 genomes]
rs4846730	1.00[AMR][1000 genomes]
rs55663020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56328548	0.96[ASN][1000 genomes]
rs56937190	0.89[ASN][1000 genomes]
rs57474116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57708351	0.89[ASN][1000 genomes]
rs58434051	0.83[ASN][1000 genomes]
rs58894876	0.96[ASN][1000 genomes]
rs59437737	0.89[ASN][1000 genomes]
rs61470357	0.93[AFR][1000 genomes]
rs869254	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222195000-222216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222204200-222216600	Weak transcription	Aorta	Aorta
3	chr1:222205800-222212600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
5	chr1:222208400-222212800	Weak transcription	Right Ventricle	heart
6	chr1:222208600-222213200	Weak transcription	Psoas Muscle	Psoas
7	chr1:222209000-222212800	Weak transcription	Fetal Brain Male	brain
8	chr1:222210400-222212800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:222211200-222212800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:222211200-222213400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:222211200-222215200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:222211200-222216600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:222211400-222212400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:222211400-222214000	Enhancers	Right Atrium	heart
15	chr1:222211400-222215200	Weak transcription	Osteobl	bone
16	chr1:222211400-222216800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:222211600-222214400	Enhancers	Left Ventricle	heart
18	chr1:222211800-222212000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:222211800-222215200	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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