Variant report

Variant	rs2790759
Chromosome Location	chr1:222180936-222180937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1078502	0.91[ASN][1000 genomes]
rs1339871	1.00[ASN][1000 genomes]
rs17011186	1.00[ASN][1000 genomes]
rs17011190	1.00[ASN][1000 genomes]
rs17011199	1.00[ASN][1000 genomes]
rs17011200	0.92[ASN][1000 genomes]
rs17011202	1.00[ASN][1000 genomes]
rs17011219	0.96[ASN][1000 genomes]
rs17011229	0.96[ASN][1000 genomes]
rs17011236	0.96[ASN][1000 genomes]
rs2800857	1.00[AMR][1000 genomes]
rs2800858	1.00[AMR][1000 genomes]
rs2996677	1.00[AMR][1000 genomes]
rs56328548	1.00[ASN][1000 genomes]
rs56937190	0.94[ASN][1000 genomes]
rs57708351	0.94[ASN][1000 genomes]
rs58434051	0.87[ASN][1000 genomes]
rs58894876	1.00[ASN][1000 genomes]
rs59437737	0.94[ASN][1000 genomes]
rs61277766	1.00[AMR][1000 genomes]
rs74147368	0.96[ASN][1000 genomes]
rs869254	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222169200-222184000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:222180000-222181000	Enhancers	Liver	Liver
3	chr1:222180000-222181400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:222180400-222181200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:222180400-222181200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:222180400-222181400	Weak transcription	HSMM	muscle
7	chr1:222180800-222181000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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