Variant report

Variant	rs17011236
Chromosome Location	chr1:222208152-222208153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1078502	0.95[ASN][1000 genomes]
rs1339871	0.96[ASN][1000 genomes]
rs17011186	0.96[ASN][1000 genomes]
rs17011190	0.96[ASN][1000 genomes]
rs17011199	0.96[ASN][1000 genomes]
rs17011200	0.88[ASN][1000 genomes]
rs17011202	0.96[ASN][1000 genomes]
rs17011219	1.00[ASN][1000 genomes]
rs17011229	1.00[ASN][1000 genomes]
rs2790759	0.96[ASN][1000 genomes]
rs56328548	0.96[ASN][1000 genomes]
rs56937190	0.89[ASN][1000 genomes]
rs57708351	0.89[ASN][1000 genomes]
rs58434051	0.83[ASN][1000 genomes]
rs58894876	0.96[ASN][1000 genomes]
rs59437737	0.89[ASN][1000 genomes]
rs74147368	1.00[ASN][1000 genomes]
rs869254	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222195000-222216000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:222204200-222216600	Weak transcription	Aorta	Aorta
3	chr1:222205200-222208200	Weak transcription	Psoas Muscle	Psoas
4	chr1:222205600-222211000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:222205800-222212600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:222206000-222208200	Weak transcription	Right Ventricle	heart
7	chr1:222206000-222210400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:222206800-222208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:222207000-222208600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:222207000-222208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:222207000-222217200	Enhancers	Fetal Heart	heart
12	chr1:222207400-222209000	Enhancers	Fetal Brain Male	brain
13	chr1:222207400-222209000	Enhancers	Dnd41	blood
14	chr1:222208000-222208400	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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