Variant report

Variant	rs57708351
Chromosome Location	chr1:222155896-222155897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1078502	0.89[ASN][1000 genomes]
rs1339871	0.94[ASN][1000 genomes]
rs17011186	0.94[ASN][1000 genomes]
rs17011190	0.94[ASN][1000 genomes]
rs17011199	0.94[ASN][1000 genomes]
rs17011200	0.86[ASN][1000 genomes]
rs17011202	0.94[ASN][1000 genomes]
rs17011219	0.89[ASN][1000 genomes]
rs17011229	0.89[ASN][1000 genomes]
rs17011236	0.89[ASN][1000 genomes]
rs2790759	0.94[ASN][1000 genomes]
rs56328548	0.94[ASN][1000 genomes]
rs56937190	1.00[ASN][1000 genomes]
rs58434051	0.89[ASN][1000 genomes]
rs58894876	0.94[ASN][1000 genomes]
rs59437737	1.00[ASN][1000 genomes]
rs74147368	0.89[ASN][1000 genomes]
rs869254	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014333	chr1:222131785-222245578	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222146200-222163800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:222152400-222156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:222152600-222157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:222152800-222156200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:222153200-222161400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:222153200-222163800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:222154200-222160800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:222155000-222156400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:222155200-222156400	Weak transcription	NHDF-Ad	bronchial
10	chr1:222155200-222157000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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