Variant report

Variant	rs55665533
Chromosome Location	chr17:63225735-63225736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63223927..63226638-chr17:63237839..63240467,2	K562	blood:
2	chr17:63220426..63221946-chr17:63223585..63225928,2	K562	blood:
3	chr17:63128086..63129836-chr17:63224877..63226699,2	K562	blood:
4	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16960906	1.00[AMR][1000 genomes]
rs28377264	1.00[AMR][1000 genomes]
rs56219537	1.00[AMR][1000 genomes]
rs58535033	1.00[AMR][1000 genomes]
rs58981948	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59428744	1.00[AMR][1000 genomes]
rs59447194	0.89[AMR][1000 genomes]
rs73347619	0.89[AMR][1000 genomes]
rs73347653	1.00[AMR][1000 genomes]
rs73347670	1.00[AMR][1000 genomes]
rs73994744	1.00[AMR][1000 genomes]
rs9893450	1.00[AMR][1000 genomes]
rs9915881	1.00[AMR][1000 genomes]
rs9916501	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:63223800-63226200	Enhancers	Primary hematopoietic stem cells	blood
3	chr17:63224000-63226400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:63224200-63225800	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr17:63224400-63225800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr17:63224400-63225800	Enhancers	Esophagus	oesophagus
7	chr17:63224400-63226200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:63224400-63226200	Enhancers	Duodenum Mucosa	Duodenum
9	chr17:63224400-63226400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:63224400-63226600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr17:63224400-63226800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:63224600-63225800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr17:63224600-63225800	Flanking Active TSS	GM12878-XiMat	blood
14	chr17:63224600-63226000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr17:63224600-63226200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr17:63224600-63226800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr17:63224800-63225800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:63225000-63225800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr17:63225000-63225800	Enhancers	HSMMtube	muscle
20	chr17:63225000-63225800	Enhancers	HUVEC	blood vessel
21	chr17:63225000-63226200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:63225200-63226000	Enhancers	Primary T cells from cord blood	blood
23	chr17:63225200-63226000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:63225200-63226200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:63225200-63226400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:63225200-63226600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:63225200-63226600	Enhancers	Dnd41	blood
28	chr17:63225200-63227600	Weak transcription	Stomach Mucosa	stomach
29	chr17:63225200-63227800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr17:63225200-63228200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr17:63225400-63225800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr17:63225400-63225800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:63225400-63225800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr17:63225400-63226000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr17:63225400-63226000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr17:63225400-63226000	Weak transcription	Spleen	Spleen
37	chr17:63225400-63226200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr17:63225400-63226200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr17:63225400-63226200	Enhancers	K562	blood
40	chr17:63225400-63231600	Weak transcription	Osteobl	bone
41	chr17:63225600-63226200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr17:63225600-63226400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr17:63225600-63227400	Weak transcription	HSMM	muscle
44	chr17:63225600-63227400	Weak transcription	NH-A	brain
45	chr17:63225600-63227800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr17:63225600-63227800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr17:63225600-63228000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links