Variant report

Variant	rs58981948
Chromosome Location	chr17:63220045-63220046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16960906	1.00[AMR][1000 genomes]
rs28377264	1.00[AMR][1000 genomes]
rs55665533	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56219537	1.00[AMR][1000 genomes]
rs58535033	1.00[AMR][1000 genomes]
rs59428744	1.00[AMR][1000 genomes]
rs59447194	0.89[AMR][1000 genomes]
rs73347619	0.89[AMR][1000 genomes]
rs73347653	1.00[AMR][1000 genomes]
rs73347670	1.00[AMR][1000 genomes]
rs73994744	1.00[AMR][1000 genomes]
rs9893450	1.00[AMR][1000 genomes]
rs9915881	1.00[AMR][1000 genomes]
rs9916501	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63217000-63223400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:63217400-63220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:63219800-63220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63220000-63220400	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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