Variant report

Variant	rs55669367
Chromosome Location	chr11:64597139-64597140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64592789..64597400-chr11:64608018..64611956,5	K562	blood:
2	chr11:64596216..64598533-chr11:64598563..64600941,2	K562	blood:
3	chr11:64595378..64597314-chr11:64882813..64885165,3	K562	blood:
4	chr11:64592701..64598851-chr11:64599392..64606228,9	MCF-7	breast:
5	chr11:64590759..64592605-chr11:64596229..64597954,2	MCF-7	breast:
6	chr11:64578003..64579709-chr11:64596961..64598982,2	K562	blood:
7	chr11:64594516..64598038-chr11:64651290..64654943,3	K562	blood:
8	chr11:64594545..64598533-chr11:64598563..64601703,3	K562	blood:
9	chr11:64545890..64547490-chr11:64596243..64597793,2	MCF-7	breast:
10	chr11:64578581..64581451-chr11:64595668..64597576,2	MCF-7	breast:
11	chr11:64595525..64597255-chr11:64644661..64647242,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168066	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000171219	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56338925	1.00[EUR][1000 genomes]
rs675254	1.00[ASN][1000 genomes]
rs71581753	1.00[ASN][1000 genomes]
rs72927054	1.00[ASN][1000 genomes]
rs72927055	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
6	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
9	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
10	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
11	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64578200-64599000	Weak transcription	Spleen	Spleen
2	chr11:64578600-64602600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:64578800-64601400	Weak transcription	Stomach Mucosa	stomach
4	chr11:64582600-64609600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:64582600-64611000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:64589600-64600800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:64590400-64602400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:64590600-64609400	Weak transcription	Fetal Lung	lung
9	chr11:64590800-64602600	Strong transcription	Placenta	Placenta
10	chr11:64590800-64604600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:64591000-64602600	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr11:64591000-64610600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:64591200-64602400	Strong transcription	Esophagus	oesophagus
14	chr11:64591200-64605400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:64591200-64609600	Strong transcription	Fetal Intestine Small	intestine
16	chr11:64591200-64611600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:64591400-64604400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:64591600-64602000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:64591600-64602600	Strong transcription	Gastric	stomach
20	chr11:64591600-64611200	Weak transcription	Small Intestine	intestine
21	chr11:64592000-64604200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:64592600-64597400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:64592600-64604200	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:64592800-64599800	Strong transcription	Fetal Intestine Large	intestine
25	chr11:64592800-64602400	Strong transcription	NHEK	skin
26	chr11:64592800-64602600	Strong transcription	Pancreas	Pancrea
27	chr11:64592800-64603000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:64592800-64608200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:64593000-64598000	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr11:64593000-64598600	Weak transcription	Thymus	Thymus
31	chr11:64593000-64600800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:64593000-64603400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:64593000-64608400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:64593200-64598000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:64593400-64607400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr11:64593400-64608200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:64593400-64611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:64593600-64598000	Strong transcription	Lung	lung
39	chr11:64593600-64601200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:64593600-64601800	Strong transcription	Primary T cells from cord blood	blood
41	chr11:64593600-64603600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:64593800-64603200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:64593800-64611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:64594000-64602000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:64594400-64609600	Strong transcription	Colonic Mucosa	Colon
46	chr11:64594600-64603000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:64595200-64597400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:64595200-64600800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:64595200-64602800	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:64595200-64604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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