Variant report

Variant	rs56338925
Chromosome Location	chr11:64609306-64609307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64609203..64612039-chr11:64947854..64950170,2	MCF-7	breast:
2	chr11:64592789..64597400-chr11:64608018..64611956,5	K562	blood:
3	chr11:64552419..64554357-chr11:64607865..64610146,2	K562	blood:
4	chr11:64606648..64614730-chr11:64876453..64886748,20	MCF-7	breast:
5	chr11:64581754..64583331-chr11:64607396..64609988,2	K562	blood:
6	chr11:64565332..64568899-chr11:64608144..64611972,4	MCF-7	breast:
7	chr11:64609234..64611979-chr11:64863640..64866328,2	MCF-7	breast:
8	chr11:64574843..64581404-chr11:64607394..64613763,11	MCF-7	breast:
9	chr11:64512052..64516458-chr11:64608185..64610769,3	K562	blood:
10	chr11:64585366..64587846-chr11:64607616..64610461,3	MCF-7	breast:
11	chr11:64543433..64548261-chr11:64608025..64614805,12	MCF-7	breast:
12	chr11:64568489..64574764-chr11:64609155..64613913,19	MCF-7	breast:
13	chr11:64609248..64611957-chr11:64839752..64841484,2	K562	blood:
14	chr11:64562357..64564495-chr11:64608221..64612051,3	MCF-7	breast:
15	chr11:64550295..64559770-chr11:64606799..64612778,15	MCF-7	breast:
16	chr11:64607104..64613028-chr11:64878466..64882720,9	MCF-7	breast:
17	chr11:64569062..64575536-chr11:64608720..64614805,15	MCF-7	breast:
18	chr11:64575754..64580490-chr11:64608432..64614008,12	MCF-7	breast:
19	chr11:64607780..64614825-chr11:64861884..64865172,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133895	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000269290	Chromatin interaction
ENSG00000068976	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000014216	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55669367	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
6	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
9	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
10	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
11	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
12	nsv555207	chr11:64600002-64620518	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
14	nsv897708	chr11:64602757-64695271	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64582600-64609600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:64582600-64611000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:64590600-64609400	Weak transcription	Fetal Lung	lung
4	chr11:64591000-64610600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:64591200-64609600	Strong transcription	Fetal Intestine Small	intestine
6	chr11:64591200-64611600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:64591600-64611200	Weak transcription	Small Intestine	intestine
8	chr11:64593400-64611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:64593800-64611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:64594400-64609600	Strong transcription	Colonic Mucosa	Colon
11	chr11:64596000-64611600	Weak transcription	Right Atrium	heart
12	chr11:64596200-64609400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:64596600-64609600	Weak transcription	K562	blood
14	chr11:64597400-64611400	Weak transcription	Liver	Liver
15	chr11:64597600-64611200	Weak transcription	Fetal Thymus	thymus
16	chr11:64597800-64611400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:64597800-64611400	Weak transcription	Fetal Kidney	kidney
18	chr11:64598000-64610800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:64601200-64609800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:64603200-64610600	Weak transcription	HSMMtube	muscle
21	chr11:64603400-64609400	Weak transcription	Hela-S3	cervix
22	chr11:64603600-64609800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:64603800-64611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:64604000-64610600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:64605000-64610000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:64605000-64610400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:64605000-64611200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:64605400-64609400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:64605800-64611000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:64606800-64610000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:64606800-64610800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:64607400-64609600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:64607400-64609600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:64607400-64610000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:64607400-64611200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:64607800-64611000	Weak transcription	Lung	lung
37	chr11:64607800-64611200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:64607800-64611200	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:64608000-64609400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:64608000-64609400	Weak transcription	Spleen	Spleen
41	chr11:64608000-64609600	Weak transcription	Fetal Intestine Large	intestine
42	chr11:64608000-64611400	Weak transcription	Primary T cells from cord blood	blood
43	chr11:64608000-64611400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:64608000-64612000	Weak transcription	Ovary	ovary
45	chr11:64608200-64609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:64608200-64609400	Weak transcription	Gastric	stomach
47	chr11:64608200-64609800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:64608200-64610800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:64608200-64611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:64608200-64611000	Weak transcription	Thymus	Thymus

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