Variant report

Variant	rs55670886
Chromosome Location	chr3:54745469-54745470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35300069	1.00[ASN][1000 genomes]
rs56011701	1.00[ASN][1000 genomes]
rs56038410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56041093	1.00[ASN][1000 genomes]
rs57670447	1.00[ASN][1000 genomes]
rs59167690	0.80[AFR][1000 genomes]
rs6808753	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870635	1.00[ASN][1000 genomes]
rs73070486	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73070493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73072204	1.00[ASN][1000 genomes]
rs73074116	1.00[ASN][1000 genomes]
rs73074128	1.00[ASN][1000 genomes]
rs73842224	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54741600-54746400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:54743800-54745800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:54743800-54751400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:54744800-54745600	Enhancers	Liver	Liver
5	chr3:54745200-54745600	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr3:54745200-54745600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr3:54745200-54747200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:54745200-54750200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:54745200-54751600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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