Variant report

Variant	rs55673164
Chromosome Location	chr5:52031923-52031924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10512989	0.92[ASN][1000 genomes]
rs16880141	0.92[ASN][1000 genomes]
rs16880156	0.90[ASN][1000 genomes]
rs16880165	0.92[ASN][1000 genomes]
rs1820165	0.92[ASN][1000 genomes]
rs55977259	0.92[ASN][1000 genomes]
rs56926375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60357834	0.86[ASN][1000 genomes]
rs72750760	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72752532	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72752550	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752560	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72752561	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72752562	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72752564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752570	0.92[ASN][1000 genomes]
rs72752572	0.92[ASN][1000 genomes]
rs72752574	0.92[ASN][1000 genomes]
rs72752575	0.92[ASN][1000 genomes]
rs72752576	0.92[ASN][1000 genomes]
rs72752577	0.92[ASN][1000 genomes]
rs72754533	0.92[ASN][1000 genomes]
rs72754535	0.92[ASN][1000 genomes]
rs72754540	0.92[ASN][1000 genomes]
rs72754543	0.92[ASN][1000 genomes]
rs72754544	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027410	chr5:52022713-52103360	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52024200-52033600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:52024200-52033800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:52025000-52033000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:52027000-52036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:52028200-52033800	Weak transcription	Small Intestine	intestine
6	chr5:52029600-52039200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:52031400-52032400	Weak transcription	Dnd41	blood
8	chr5:52031400-52033200	Weak transcription	Primary T cells from cord blood	blood

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