Variant report

Variant	rs55675252
Chromosome Location	chr1:161109826-161109827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161041322..161042651-chr1:161108963..161110253,9	K562	blood:
2	chr1:161008777..161009751-chr1:161109706..161110323,2	MCF-7	breast:
3	chr1:161066942..161070660-chr1:161107927..161110990,3	MCF-7	breast:
4	chr1:161086340..161089476-chr1:161108174..161110253,4	MCF-7	breast:
5	chr1:161108486..161110842-chr1:161128112..161131051,2	K562	blood:
6	chr1:161107535..161111051-chr1:161128901..161131051,3	K562	blood:
7	chr1:161087272..161090042-chr1:161108866..161112450,3	K562	blood:
8	chr1:161067745..161068673-chr1:161109169..161110135,2	MCF-7	breast:
9	chr1:161101205..161104282-chr1:161105868..161110171,6	MCF-7	breast:
10	chr1:161067165..161067823-chr1:161109248..161110248,2	K562	blood:
11	chr1:161107047..161112354-chr1:161123158..161127240,7	K562	blood:
12	chr1:161067113..161067628-chr1:161109423..161110149,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000224985	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000158793	Chromatin interaction
ENSG00000215845	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000143222	Chromatin interaction
ENSG00000143258	Chromatin interaction
ENSG00000158796	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57560345	0.84[AFR][1000 genomes]
rs61642842	1.00[AFR][1000 genomes]
rs74124633	1.00[AMR][1000 genomes]
rs74124643	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124646	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124650	1.00[AFR][1000 genomes]
rs74124653	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161103600-161110800	Weak transcription	Ovary	ovary
2	chr1:161103800-161123000	Weak transcription	Aorta	Aorta
3	chr1:161103800-161123400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:161104000-161112200	Weak transcription	HUVEC	blood vessel
5	chr1:161104000-161113200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:161104000-161123000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:161104400-161122800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:161104600-161123400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:161105000-161114200	Weak transcription	Fetal Intestine Small	intestine
10	chr1:161105000-161116200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:161105200-161123000	Weak transcription	A549	lung
12	chr1:161105800-161110000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:161107800-161123600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:161108000-161122800	Weak transcription	Fetal Thymus	thymus
15	chr1:161108800-161110000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:161109800-161110000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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